We got together 4 guys to have the best digital industry & random social media discussions on the planet! | Jeff Higgins, Gus Hielscher, Jordon Stone, Ryan Putnam.
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Welcome to Code for Thought, the podcast about software in research and the people behind it all. Languages: English, German, French
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Philosophy, self-improvement, fitness, the arts, parenting...to name a few of my interests.
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[EN] Let there be LUMI (EuroHPC supercomputer) - Kurt Lust
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Send us a text English edition: My guest this week is Kurt Lust from the University of Antwerp (Belgium) and part of the user support team of LUMI (Large Unified Modern Infrastructure). Acc to the website, LUMI is Europe's fastest supercomputer. Kurt tells us what it takes to run a machine like that and all the gotchas that he and his colleagues en…
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[EN] HPC software installations made EESSI - Alan O'Cais and Kenneth Hoste
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Send us a text English Edition: Meet Kenneth Hoste and Alan O'Cais who will tell us about EESSI,The European Environment for Scientific Software Installation for high performance computing (HPC). Links: https://www.eessi.io Home page of EESSI https://docs.easybuild.io EESSI docs https://github.com/boegel Kenneth's GitHub page https://cernvm.cern.ch…
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[FR] Analyse automatique d’articles encyclopédiques - Alice Brenon (GEODE)
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Send us a text L'édition française: Alice Brenon est une doctorande et chercheuse du CNRS en informatique linguistique au LIRIS (Laboratoire d'InfoRmatique en Image et Systèmes d'information) à Lyon. Alice décrit son engagement dans le projet GEODE (“Encyclopedic GEOgraphical DiscoursE: Writing about Geography in France from the Enlightenment to th…
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[EN] Championing Research Software Part 1: Champions at Imperial College London
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Send us a text Meet 6 of the research software champions at Imperial College London (UK) who help to create better research - through better software: Alan Xavier, Lukas Kopecky, Jakub Lala, Benjamin Scharpf, Sara Patti and Sneha Jha. Links https://www.imperial.ac.uk/computational-methods/rse/call-for-rs-champions-2024/ The call for the 2024 champi…
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[EN] BONUS: Green Computing at the RSE Conference 2024 in Newcastle
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Send us a text [EN] English Edition: "Green computing" had a strong showing at the annual conference for Research Software Engineering in Newcastle, UK, early September 2024. I talk to the presenters, poster creator and organisers of the birds of the feather session on the subject. In addition you hear from Charlotte Pascoe and Poppy Townsend from …
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[DE] Stahlwalzungen, Kristalle und Offene Software - mit Ralf Hielscher und Christoph Renzing
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Send us a text Deutsche Ausgabe: in der ersten DE Ausgabe nach der Sommerpause geht es gleich um 2 Open Source Projekte: MTEX und PyRolL. Mit von der Partie sind die Entwickler und Autoren der Softwarepakete Ralf Hielscher (MTEX) und Christoph Renzing (PyRolL), beide von der TU Bergakademie Freiberg, Sachsen. Links: https://mtex-toolbox.github.io M…
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[EN] Going Large - CERN VM/VMFS - Laura Promberger, Jakob Blomer
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Send us a text ENGLISH EDITION: There are a lot of "large" things at CERN, including the amount of data produced and the software needed to manage and analyse them. In this episode I talk to Laura Promberger and Jakob Blomer from the CERN virtual machine/file system VM/VMFS project about how this set of tools is helping researchers. And not just ph…
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[FR] L'apprentissage automatique et la reproductibilité - avec Pascal Monasse (LIGM)
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Send us a text L'édition française: Ça y est - le premier épisode de Code for Thought en français. Comment reproduire et évaluer l'apprentissage automatique? Publier les résultats de recherche avec les données et le code source? Avec Pascal Monasse, chercheur chez IMAGINE (Laboratoire d'informatique Gaspard Monge) et éditeur de journal IPOL - Image…
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[EN] Beyond Open Research - Imperial College London
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Send us a text ENGLISH EDITION: Beyond Open Research is a project at Imperial College London (UK), that tries to change research culture more open and transparent. I met with Dr Hamid Khan, who was leading the project and Prof Julie McCann, Vice-Dean for the Faculty of Engineering to find out more about exactly how they want to go "beyond" open res…
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[EN] Teaser Season 8 - Willkommen, Bienvenue, Welcome
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Send us a text ENGLISH EDITION: Welcome back to Season 8 of Code for Thought. Just before we dive into the new season, this trailer will tell you what lies ahead between September and December 2024. Support the show Thank you for listening! Merci de votre écoute! Vielen Dank für´s Zuhören! Contact Details/ Coordonnées / Kontakt: Email mailto:code4t…
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[EN] Planning your research software - a workshop in Paris
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Send us a text In May 2024, I attended a workshop/training course on Software Management Plans (SMP), held at the University Gustave Eiffel east of Paris, France. In this episode I talk to the organisers and participants about why SMPs might be useful and under what circumstances. Teresa Gomez-Diaz, Geneviève Romier, (2018). Research Software Manag…
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[EN] Thriving Ibis or How to thrive in HPC - Dr AJ Lauer
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Send us a text My guest for this episode is Dr AJ Lauer. AJ has been working hard to make the HPC workplace a more open and welcoming environment. She was inclusivity chair at SC21 in St Louis, US and worked with other groups such as Women in HPC. Lately, in 2023, she created her organisation 'Thriving Ibis' to work with senior managers and leaders…
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[EN] Digital Research Academy - A Grassroots Network for Trainers
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Send us a text The Digital Research Academy - DRA - was created in 2023 to meet the increasing demand for training in open science and research. In this episode I talk to the two founders, Heidi Seibold and Joyce Kao, as well as members like Yeganeh Khazaei (Yegi) and Danny Garside. https://digital-research.academy the home page of the DRA https://…
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[EN] The Turing Way Part 2: From Handbook to Community
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Send us a text In the second part episode on the Turing Way, I meet with contributors like Patricia Herterich and Sarah Gibson - who were part of the original team - as well as Malvika Sharan and Anne Steele who joined later. Through these conversations I hope to show how the Turing Way transitioned from being an online guide for reproducibility an…
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[EN] CERN: Keeping the lights on with OpenStack and Kubernetes - Spyridon Trigazis
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Send us a text CERN, the European Nuclear Research Centre, is celebrating its 70th birthday in 2024 and I want to give you a glimpse of the kind of work that happens there. Meet Spyridon Trigazis, who will take us through CERN's infrastructure and how they use OpenStack and Kubernetes to "keep the lights" on. https://home.cern/ CERN homepage https:…
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[EN] ByteSized RSE: Python Packaging - Liam Pattinson, Laszlo Sranger
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Send us a text In this last ByteSized RSE episode of this season, we talk about an important subject for Python engineers: Packaging. With my guests Liam Pattinson from York University (UK) and Laszlo Sranger from Hypergolic, we go through the standard Python tools as well as package managers such as Poetry. Links: https://packaging.python.org/en/l…
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[DE] Klima, Modelle und das natESM Projekt - Iris Ehlert, Hendryk Bockelmann
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Send us a text In dieser letzten Folge vor den Sommerferien treffe ich mich mit Dr Iris Ehlert und Dr Hendryk Bockelmann, um mit ihnen über ihre Arbeit am natESM (nationale Erdmodellierungs Systeme) zu sprechen. Hier ein paar Links https://www.nat-esm.de/ Home page vom natESM https://www.nat-esm.de/services/support-through-sprints Der Sprintprozess…
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[EN] Research Software Engineering Workshop at ISC 2024 in Hamburg
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Send us a text The International Conference of Supercomputing, ISC, met in Hamburg (Germany) between 12-16 May 2024. For the first time, a workshop on Research Software Engineering was held there. And I talk to some of the organisers, Stefanie Reuter and Matt Archer and presenters, Eleanor Broadway and Samantha Wittke, how it all went. https://www.…
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[EN] A National Day for Research Software - the eScience Center
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Send us a text What a fun day that was: the National Research Software Day in Hilversum on 23 April 2024. It was organised by the eScience Center in the Netherlands and in the course of this episode you will hear from one of the organisers, Lieke, a keynote speaker - Jenny Bryan, members of a panel discussions on research infrastructure. But also f…
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[EN] ByteSized RSE: Make Science and Software FAIR (again) - Jamie Quinn
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Send us a text In this session of ByteSized RSE we talk about the FAIR principles and research software. My guest helping me with that is Jamie Quinn, currently RSE at Imperial College London. Here are a few links: https://www.nature.com/articles/sdata201618 The article on FAIR https://www.nature.com/articles/s41597-022-01710-x The article on FAIR …
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[EN] Happy Birthday - The Turing Way Part 1
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Send us a text The Turing Way was created 5 years ago and during the Collaborations Workshop 2024 at the University of Warwick, UK, we had a big birthday party to celebrate the occasion. In this episode, part 1 of 2 episodes on The Turing Way, I sit down with the founder of The Turing Way, Dr Kirstie Whitaker, who is also the Programme Director for…
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[DE] Wissenschaft von und mit Bürgern - Bastian Greshake Tzovaras
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Send us a text Bastian Greshake Tzovaras arbeitet am Alan Turing Institute in London zum Thema Citizen Science, also Bürgerwissenschaften. Und dies ist auch das Thema unseres Gesprächs, denn Bastian arbeitet daran schon seit geraumer Zeit. Und er zeigt uns wie Wissenschaft durchaus von einer engeren Zusammenarbeit mit Bürgern profitieren kann. Link…
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[EN] Changing the Landscape - The Alan Turing Skills Policy Award - Part II
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Send us a text In part two of this "mini-series" on diverse roles in data science teams, I speak with Dr Emma Karoune from the Alan Turing Institute https://www.turing.ac.uk/ and the deputy director of the Software Sustainability Institute of the UK, Simon Hettrick. Emma and I explore the skills and policy landscape of modern data science roles. Em…
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[EN] Collaborations Workshop 2024
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Send us a text The Collaborations Workshop, run by the Software Sustainability Institute https://www.software.ac.uk/ is a long-running institution. I had the pleasure of going there in May 2024 for the first time. It was an exciting, but also exhausting, couple of days. The 3 themes focused on AI/ML in science, environmental sustainability and citi…
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[EN] Carpentries for All - Greg Wilson
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Send us a text My guest in this episode is Greg Wilson, who co-founded the Carpentries in 1998 together with Brent Gorda. Since then, the Carpentries have gone global teaching essential computing and data skills and training the next generation of teachers. Greg stepped down from the Carpentries a while ago, but he still feels passionate about thei…
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[DE] Software und Zitate - Citation File Format - Stephan Druskat
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Send us a text In dieser Folge geht es um die Frage, wie man Software in wissenschaftlichen Artikeln zitieren kann. Die Antwort: das Citation File Format (CFF) - an dem mein Gast Stephan Druskat maßgeblich mitgewirkt hat. Stephan und ich hatten uns auf der letzten UK RSE Konferenz in Swansea in einer der Pausen zu einem Schwätzchen getroffen. Inzwi…
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[EN] ByteSized RSE: Property Based Testing - Duncan McGregor and Nicholas del Grosso
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Send us a text Property based testing can help you make your tests more effective and your code more robust. Together with my guests Duncan McGregor and Nicholas del Grosso we talk about what property based testing is and in particular go into one widely used implementation for Python - the Hypothesis library. Here are a few links: https://incremen…
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[EN] The making of a diveRSE community - Jeremy Cohen, Michael McLeod
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Send us a text In this episode I talk about two different aspects of diversity in tech and in research software engineering in particular. First we hear from Jeremy Cohen, who has been running the DiveRSE seminar series since 2022 and is the co-author on a paper on the subject (link below). Then I talk to Michael McLeod, who is telling us about the…
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[EN] Make computing GREENER - Loïc Lannelongue
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Send us a text How can we make computing environmentally more sustainable. Meet Loïc Lannelongue, who - together with Michael Inouye - created the Green Algorithms project. Amongst other things, it allows us to estimate the carbon footprint of our algorithms and computing jobs. The project has been awarded the HDR UK Susannah Boddie Award for Impac…
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[EN] Lecturers without Borders - Eugenia Covernton
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Send us a text Lecturers without Borders wants to bring scientists and school students together. It is an exciting project and for this episode I talked to Eugenia Covernton, who's leading the non-profit organisation. So, if you are a travelling researcher or RSE, or even if you want to do it from the comfort of your home, LeWiBo give you an opport…
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[EN] scikit-learn: Software is People
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Send us a text scikit-learn is a highly successful and popular Python library for data science and machine learning. It is open source and has a large contributor base. I had the pleasure to meet with some of the scikit-learn team to talk about how they got involved and how it is possible to run an Open Source project of this size and scale. If you…
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[EN] Building Data Science Teams - Alan Turing Institute Skills and Policy Award - Part I
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Send us a text In this episode I meet with Dr Emma Karoune and some of her colleagues from The Alan Turing Institute in London https://www.turing.ac.uk/ to talk about who and what skills we need to create and run modern data science teams. Emma is one of the awardees of the Skills and Policy award at the Turing. https://www.turing.ac.uk/skills-poli…
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[EN] ByteSized RSE: the Citation File Format - Jason Maassen
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Send us a text This ByteSized RSE episode talks about the Citation File Format (CFF) https://citation-file-format.github.io/ , created in 2017 to promote the inclusion of software in scientific papers. My guest is Jason Maassen from the eScience Center in the Netherlands. For answers to the quiz questions, email: mailto:code4thought@proton.me Backg…
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[DE] deRSE24 - Die RSE Konferenz in Würzburg
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Send us a text Die diesjährige Konferenz des deRSE Vereins in Deutschland fand in Würzburg zwischen dem 5.März und 7.März statt. Es gab, wie auch schon letztes Jahr viele interessante Schwerpunktthemen, wie z.B. Continuous Integration oder Teaching RSE. In dieser Folge hört Ihr von verschiedenen TeilnehmerInnen der Konferenz: John Arnold RWTH Aache…
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[EN] Crossing the Language Barrier - Yanina Saibene
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Send us a text Yanina Saibene is well known in the R community and from her work e.g. in the Software Carpentries. In this episode we talk about what it takes to localise and translate training programs and indeed software applications and packages. https://yabellini.netlify.app/about/ a bit about Yanina from her home page https://carpentries.org/ …
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[EN] From Rock Climbing to AI - Janan Arslan
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Send us a text I had the pleasure of meeting with Janan Arslan in Paris in 2023. Janan has a fascinating career path that involved not only forensics but also various roles in AI in medicine, which is what she now does at the Brain Institute in Paris. https://www.inria.fr/fr/aramis The Aramis Lab in Paris https://melbourne-cshe.unimelb.edu.au/event…
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[EN] ByteSized RSE: User Experience Design - Maeg Doherty
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Send us a text In this session we talk about the importance of user experience and user experience design. My guest is Meag Doherty, who works for the National Institutes of Health in the USA and is a Fellow of the Software Sustainability Institute (SSI). https://www.software.ac.uk/fellowship-programme/meag-doherty Meag’s Fellow profile at the SSI.…
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[DE] Es tut sich was im RSE-Land - mit Beiträgen vom deRSE, GI und NFDI
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Send us a text In dieser Folge hören wir Beiträge vom Vorstand des Vereins zur Forschungssoftwareentwicklung deRSE e.V., Anna-Lena Lamprecht und der RSE Arbeitsgruppe in der Gesellschaft für Informatik und Bernd Flemisch und Martin Hammitzsch über deren Arbeit im NFDI. Denn, es tut sich so einiges im Bezug auf Forschungssoftware im deutschsprachige…
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[EN] Open Source Projects & Communities - Chris Holdgraf from 2i2c
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Send us a text In this episode I talk to Chris Holdgraf, executive director of https://2i2c.org about what it takes to manage and run open source organisations. Open source projects come with unique challenges (and opportunities) and I think Chris brings important insights from his experience at 2i2c. Some links: https://chrisholdgraf.com Chris' ho…
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[EN] Make Science Reproducible (Again) - Rima-Maria Rahal, Peter Steinbach
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Send us a text People are talking about the "Reproducibility Crisis" in science. Good to see, that there are researchers that do something about it. Meet Rima-Maria Rahal and Peter Steinbach from the German Reprodicibility Network. I met Rima and Peter in 2023 to talk about why reproducibility is important, what we as researchers can do to make our…
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Send us a text If you want to co-host an episode on Code for Thought get in touch. per email on mailto:code4thought@proton.me RSE Slack channels in the UK (@code4thought or @piddie) or the US (@Peter Schmidt) Mastodon https://fosstodon.org/@code4thought It's great fun, as my co-host Selina tells us in the short interview. Support the show Thank you…
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[EN] Learning How to Learn (and Teach) - Barbara Oakley
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Send us a text With her online course 'Learning How to Learn' (and companion book 'A Mind for Numbers'), Barbara Oakley, distinguished professor in engineering, reached many of us who - like myself - wanted to improve the way we learn, adopt new technologies or get into complex subject areas. Many researchers, PhD students, post-docs teach themselv…
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[DE] Eine RSE Arbeitswelt für Alle - Bernadette Fritzsch und Ruth Schöbel
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Send us a text Softwareentwicklung, auch im Forschungsbereich ist immer noch eine Männerdomäne. Aber es gibt inzwischen viele Bestrebungen den Zugang zu Stellen und Berufsaussichten für Frauen und andere unterrepräsentierte Gruppen zu öffnen. In dieser Folge hören wir von zwei Vertreterinnen: Bernadette Fritzsch vom Alfred Wegener Institut in Breme…
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[EN] ByteSized RSE: Easy Does It - with easybuild - Jörg Saßmannshausen
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Send us a text It's time for a ByteSized RSE episode - and this time on the subject of 'easybuild' a tool to help you build and install software on high performance computers (HPC). My guest to help me with presenting easybuild is Jörg Saßmannshausen from Imperial College in London, UK. NOTE: this is an entry level discussion. And there is a QUIZ a…
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[EN] Patterns in Science And Medicine - Veronika Cheplygina
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Send us a text My guest in this episode is Veronika Cheplygina, Associate Professor at the IT University of Copenhagen in Denmark. We talk about machine learning and AI in medicine and Veronika brings a badly needed realism to the discussions. In the latter part of our conversation we also focus on the difficult and sometimes frustrating aspects of…
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[EN] Net Zero and Computing? Part I: Wim Vanderbauwhede and John Wernvik
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Send us a text Welcome back to a new season of Code for Thought. The subject of this episode is energy consumption in computing. My guests are Wim Vanderbauwhede (University of Glasgow, UK) and John Wernvik (Eco Datacentre, Sweden). This is a big subject area and there will be more on this later this season - so watch out. Links: https://www.dcs.gl…
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[DE] Wissenschaft ohne Grenzen - Konrad Förstner
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Send us a text So, das ist jetzt die letzte Folge der 6. Serie von Code for Thought und diesmal geht es um Open Science. Mein Gesprächspartner ist Konrad Förstner von der TH Köln, den einige von Euch vielleicht vom Open Science Radio her kennen, das er mit Matthias Fromm schon seit längerer Zeit betreibt. Euch Allen ein paar schöne und hoffentlich …
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[EN] Open Data without Friction - Sara Petti and Evgeny Karev
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Send us a text In this last (English) episode of Season 6, I'll be talking to Sara Petti and Evgeny Karev from the Open Knowledge Foundation. Sara and Evgeny work on a project called Frictionless Data, which aims to make working with (open) data easier and more seamless. Like many organisations around open source and open data they invite contribut…
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[EN] Being a Research Software Engineer in France - Ghislain Vaillant
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Send us a text I met Ghislain Vaillant for our interview at the Brain Institute at the Pitié Salpetrière Hospital in Paris. Ghislain has an interesting career path that took him from an RSE role in the UK to the private sector and back to academia (in France) again. Our conversation touches on differences in RSE roles between countries (e.g. UK/Fra…
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[EN] ByteSized RSE: Web Development with Django
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Send us a text In this episode of ByteSized RSE I talk about Django, a Python based web development framework that was developed in the mid 2000s. My guests are Tom Couch from the University College London and Max Albert from Southampton University. Links: https://www.djangoproject.com the entry point for Django with tutorials and references https:…
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